PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G031900.1
Common NameB456_009G031900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 522aa    MW: 58108.4 Da    PI: 7.591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G031900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10347391554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h   Er+RR+++N++f+ Lr+llP+      +K + +++L  + eY+ sL
  Gorai.009G031900.1 347 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 391
                         6778********************97.....79999**********9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.488342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-11344395No hitNo description
SuperFamilySSF474599.55E-15345410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13346409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8347391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-12348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP NCLIGSDGWY NEQNSTQPGA  60
LVLFLEYRRL TFPLENNPGL VPGFAFRNYR PYIELGELEL QSRASHQTQR QFYRTAVFMG  120
CKSGEIELGS PNAVNLNMEM EMRTFFPDDF SRQSLVAVSE PTDPNNPSSS SSSLRSLSTD  180
SPDSYLIFTV PNASRPQVPT GSETTPFLLQ AKPASSSMYD PHQQAMQQAL SEMRSNINLP  240
SLESENAAMT RAILAVLTSP SSSSSSTSQY HSQQSHNLPP SYQPNSKATA FKRYGSPLGA  300
PTTTAARASL RAQSMLKRAI LFYRRFKLVR SEQQPRSCAP TVHQLHHMLS ERKRREKLNE  360
SFDALRSLLP PGTKKDRVSV LASTREYLTS LKSQIVELNR QNQLLEAAQA SATSSDEANG  420
SSNERLNIRI IPVPESTSEQ RIIELRVSVG GEVSIVDILI QLLQFLKLDR NISLMSTEAN  480
TRTAELGSIN HVNLRFRIEG DDWDESTFQE AVRRILADLA Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERKRRE
2351356RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440726.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A0D2UFH10.0A0A0D2UFH1_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-71bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]